Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <doi:10.1038/nmeth.4662>.
| Version: |
0.3.0 |
| Depends: |
R (≥ 3.5.0) |
| Imports: |
coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, harmony, ica, igraph, irlba, leiden, locfit, methods, MASS, Matrix, matrixStats, parallel, pheatmap, princurve, quadprog, randomForest, runner, Rcpp, RColorBrewer, Rtsne, umap, vegan |
| LinkingTo: |
Rcpp (≥ 0.11.0) |
| Suggests: |
batchelor, DESeq2, knitr, rmarkdown, SingleCellExperiment, slingshot, SummarizedExperiment |
| Published: |
2023-03-13 |
| Author: |
Dominic Grün |
| Maintainer: |
Dominic Grün <dominic.gruen at gmail.com> |
| License: |
GPL-3 |
| NeedsCompilation: |
yes |
| SystemRequirements: |
C++17 |
| CRAN checks: |
RaceID results |