Apoderoides: Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree

Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.

Version: 3.0.0
Depends: R (≥ 3.5.0)
Imports: ape, Rcpp, RcppProgress
LinkingTo: Rcpp, RcppProgress
Suggests: knitr, rmarkdown
Published: 2024-07-10
DOI: 10.32614/CRAN.package.Apoderoides
Author: Satoshi Aoki [aut, cph, cre], Keita Fukasawa [ctb]
Maintainer: Satoshi Aoki <aokis1ll1 at gmail.com>
BugReports: https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues
License: MIT + file LICENSE
URL: https://github.com/Sa-to-shi-A-o-ki/Apoderoides
NeedsCompilation: yes
Materials: NEWS
CRAN checks: Apoderoides results


Reference manual: Apoderoides.pdf
Vignettes: Apoderoides Tutorial


Package source: Apoderoides_3.0.0.tar.gz
Windows binaries: r-devel: Apoderoides_3.0.0.zip, r-release: Apoderoides_3.0.0.zip, r-oldrel: Apoderoides_3.0.0.zip
macOS binaries: r-release (arm64): Apoderoides_3.0.0.tgz, r-oldrel (arm64): Apoderoides_3.0.0.tgz, r-release (x86_64): Apoderoides_3.0.0.tgz, r-oldrel (x86_64): Apoderoides_3.0.0.tgz
Old sources: Apoderoides archive


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