CRAN Package Check Results for Package phyclust

Last updated on 2022-10-06 15:53:51 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-30 47.14 75.88 123.02 WARN
r-devel-linux-x86_64-debian-gcc 0.1-30 43.13 57.14 100.27 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-30 167.45 WARN
r-devel-linux-x86_64-fedora-gcc 0.1-30 164.74 WARN
r-devel-windows-x86_64 0.1-30 164.00 148.00 312.00 NOTE
r-patched-linux-x86_64 0.1-30 49.69 70.37 120.06 OK
r-release-linux-x86_64 0.1-30 43.18 71.12 114.30 OK
r-release-macos-arm64 0.1-30 46.00 OK
r-release-macos-x86_64 0.1-30 70.00 OK
r-release-windows-x86_64 0.1-30 172.00 156.00 328.00 OK
r-oldrel-macos-arm64 0.1-30 63.00 OK
r-oldrel-macos-x86_64 0.1-30 93.00 OK
r-oldrel-windows-ix86+x86_64 0.1-30 145.00 124.00 269.00 OK

Additional issues

clang15 clang15 M1mac

Check Details

Version: 0.1-30
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     msdir/streec.c:243:40: warning: while loop has empty body [-Wempty-body]
     msdir/streec.c:476:37: warning: while loop has empty body [-Wempty-body]
     seq-gen/eigen.c:47:38: warning: for loop has empty body [-Wempty-body]
     seq-gen/eigen.c:51:40: warning: for loop has empty body [-Wempty-body]
     paml_baseml/tools.c:1176:40: warning: for loop has empty body [-Wempty-body]
     paml_baseml/tools.c:1179:38: warning: for loop has empty body [-Wempty-body]
     paml_baseml/tools.c:1182:44: warning: for loop has empty body [-Wempty-body]
Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1-30
Check: Rd files
Result: NOTE
    checkRd: (-1) 11_d.EMControl.Rd:52: Escaped LaTeX specials: \_
    checkRd: (-1) plotdots.Rd:33: Escaped LaTeX specials: \#
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 0.1-30
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     ./phyclust/phyclust_label.h:49:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     ./phyclust/phyclust_em.h:72:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     phyclust/phyclust_label.h:49:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     phyclust/phyclust_em.h:72:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     phyclust/phyclust_em_control.c:14:34: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     phyclust/phyclust_label.c:12:42: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.h:67:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.h:69:11: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/R_ms.h:20:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:802:6: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:989:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:1006:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:1066:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:1108:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:1122:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:1122:37: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms.c:1145:13: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms_main.c:11:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/ms_main.c:101:15: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/R_rand.c:12:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     msdir/streec.c:243:40: warning: while loop has empty body [-Wempty-body]
     msdir/streec.c:476:37: warning: while loop has empty body [-Wempty-body]
     seq-gen/evolve.h:76:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/evolve.h:77:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/aamodels.c:60:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/aamodels.c:63:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/aamodels.c:98:38: warning: invalid UTF-8 in comment [-Winvalid-utf8]
     seq-gen/aamodels.c:292:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/aamodels.c:350:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/eigen.c:47:38: warning: for loop has empty body [-Wempty-body]
     seq-gen/eigen.c:51:40: warning: for loop has empty body [-Wempty-body]
     seq-gen/evolve.c:79:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/evolve.c:95:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/evolve.c:130:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/evolve.c:172:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/model.c:81:22: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/model.c:82:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/model.c:84:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/nucmodels.c:83:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/nucmodels.c:84:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/nucmodels.c:396:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/nucmodels.c:456:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/treefile.h:57:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:90:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:91:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:93:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:94:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:95:27: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:96:21: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:97:24: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:101:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:166:23: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:703:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:732:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:807:14: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/seq-gen.c:900:17: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/treefile.c:254:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/twister.c:195:25: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     seq-gen/twister.c:237:20: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     paml_baseml/baseml.c:52:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     paml_baseml/treesub.c:2168:16: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     paml_baseml/treesub.c:2256:19: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
     paml_baseml/tools.c:1176:40: warning: for loop has empty body [-Wempty-body]
     paml_baseml/tools.c:1179:38: warning: for loop has empty body [-Wempty-body]
     paml_baseml/tools.c:1182:44: warning: for loop has empty body [-Wempty-body]
     paml_baseml/tools.c:1329:12: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1-30
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     phyclust/phyclust_label.h:49:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     phyclust/phyclust_em.h:72:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     phyclust/phyclust_em_control.c:14:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     phyclust/phyclust_label.c:12:17: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.h:67:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.h:69:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/R_ms.h:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:802:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:989:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:1006:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:1066:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:1108:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:1122:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms.c:1145:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms_main.c:11:9: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/ms_main.c:101:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     msdir/R_rand.c:12:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/evolve.h:76:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/evolve.h:77:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/aamodels.c:60:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/aamodels.c:63:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/aamodels.c:292:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/aamodels.c:350:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/evolve.c:79:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/evolve.c:95:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/evolve.c:130:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/evolve.c:172:7: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/model.c:81:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/model.c:82:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/model.c:84:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/nucmodels.c:83:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/nucmodels.c:84:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/nucmodels.c:396:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/nucmodels.c:456:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/treefile.h:57:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:90:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:91:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:93:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:94:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:95:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:96:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:97:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:101:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:166:13: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:703:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:732:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:807:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/seq-gen.c:900:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     seq-gen/treefile.c:254:6: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     paml_baseml/baseml.c:52:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     paml_baseml/treesub.c:2168:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
     paml_baseml/treesub.c:2256:5: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
Flavor: r-devel-linux-x86_64-fedora-gcc